Scaffold Ga0101770

Basic Information
Taxon OID	3300006674 Open in IMG/M
Scaffold ID	Ga0101770_1023900 Open in IMG/M
Source Dataset Name	Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwegian Sequencing Centre (NSC)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Norwegian Sequencing Centre (NSC)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32242
Total Scaffold Genes	37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (75.68%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

32242

Total Scaffold Genes

37 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (75.68%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Ecosystem

Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location
Location Name	Fredrikstad, Norway
Coordinates	Lat. (^o)	59.185359	Long. (^o)	10.970104	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Fredrikstad, Norway

Coordinates

Lat. (^o)

59.185359

Long. (^o)

10.970104

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F077200	Metagenome / Metatranscriptome	117	N
F088753	Metagenome / Metatranscriptome	109	N
F105007	Metagenome	100	N
F105008	Metagenome / Metatranscriptome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102390024	F105008	N/A	MTAIYDIAREEMMRNGDISLHTADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRMGNFTTTVPFVWKKGDVFSVVRDILETLPQRCRTEEILGPVPVVSAPGCAVRDGYAHLSRAGMFDLLFPAHDIMFEIPCETGGTFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRLDEEMLKIALLERGTEISSIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRLYDDGYLDIIR*
Ga0101770_102390027	F088753	GGTGG	MTECGRILQXXEMLKKTNDERLARRLSDWYGFVLSELTSGRIGDFIRSVPADFVSLPSNGRKVEKLIQGCIRTLFEMAEDGRIPFETTAYMAESLRTGRKVQLRYAGQICSKKLGHVLPVVLHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCLSSDCDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSREELFMQIARAVAKVIEYEVATEFEKEKFAREDDDWVLEIR*
Ga0101770_102390036	F105007	AGGA	MEDADVLEGIHRKFCETGDISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRWGVFVHTVPLGSTEDFYRNLGTTGDPINLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDGIPKTLLIKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEEALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDVIR*
Ga0101770_10239008	F077200	GGAG	MKFTVIEVKTQPNLKRIEEYARRYGMTPEEALEKKRIGDDYFPIRDQQIVSVGLLNLFSDKEDSVSVMAAVYTGEEKKVLEETAKKLEKIVKATGKPFFITGDGRKYALEILGGRAMAYMIEAKKADQEIIPELKDMIRLITSQKNGYLKPFDFRDSVDLQAMLGLGSDRTPLPDGLKXDNKSLPALAEETKSTVLDMAVNYAAYLEAQGEKIKPVVYKLNEKIFKTVEIFEFPEKKEQEIETDEGDIDIN*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0101770_1023900

Overview

Ecosystem & Geography

Associated Families

Sequences