Scaffold Ga0101770_1021672

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1021672
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 48451
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (69.81%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077200	Metagenome / Metatranscriptome	117	N
F088753	Metagenome / Metatranscriptome	109	N
F105007	Metagenome	100	N
F105008	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102167218	F105008	N/A	MTAIYDIAREEMMRNGDISLHTADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRTGNFTTTVPFVWKKGDVFSVVRDILETLPQRCRTEEILGPVPVVSAPGCAVRDGYAHLSRAGMFDLLFPDHDILFEIPCETGWTFRGLLCRSAVKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRLDEEMLKIAMLERGTEISGIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRLSDDGYLDIIR*
Ga0101770_102167221	F088753	GGTGG	MTECGRILQELEMLKKTNDERLARRLSDWYGFVLSELASGRVGDFIRSVPVDFVALPFNGKRVENLINKCIKTLFEMVKDGKIPFETTAYMAESLRTGRKFWLRHAGQICSKKLGHALPVVLHKETITEMILREAKLLTLSKVAVVVKLYCRIPGEFYPAVCCLSSDCDIAKKVLRNITKDFVRDRMTSFPKVDLKKDSFYLESGYGFGENGIIFINKGRAYYRTKDGTHELPDVDLDSREELFMQIARAVAKVIEYEVATEFEKEKFAREDDDWVLEIR*
Ga0101770_102167228	F105007	AGGA	MEDADVLEGIHRKFCETGDISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRWGVFVHTVPLGSTEDFYRNLGTTGDPINLASCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDGIPKTLLIKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDVERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDVIR*
Ga0101770_102167235	F105007	AGGA	MEDADVLEGIHRKFCETGDISYRESDAVFRIAQRFFSRKSYLSLKDVVSKWYEKVKREILNGRRGVFMHTVPLGSTEDFYRNLGTAGDPANLARCLTEINYIFREMKRPVCINLVFLRDKDQLCTLGDNIPKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDAERIEGALKTADCVAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDVIR*
Ga0101770_10216724	F077200	GGAG	MKFTVIEVKTQPNLKRIEEYARRYGMTPEEALEKKRIGDDYFPIRDQQIVSVGLLNLFSDKEDSVSVMAAVYAGEEKKVLEETAKKLEKIVKATGKPFFITGDGRKYALEILGGRAMAYMIEAKKADQEIIPELKDMIRLITSQKNGYLKPFDFRDSVDLQAMLGLGSDRTPLPDGLKYDNKSLPALAEETKSTVLDMAVNYAAYLEAQGEKIKPVVYKLNEKIFKTVEIFEFPEKKEQEQEIETDESDIDIN*
Ga0101770_102167243	F088753	GGTGG	MTECGRILQELEMLKKTNDERLARRLSDWYGFVLSELTAGRVGDFIRSVPVDFVSLPFNGKRVENLINKCIKTLFEMAEDGRIPFETTAYMAESLRTGRKFWLRHAGQLCSKKLGPVLPIILHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCLSSDCDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSREELFMQIARAVAKVIEYEVATEFEKEKFTREDDDWVLEIR*
Ga0101770_102167247	F105008	N/A	MTAIYDIAREEMMRNGDISLHTADGLFEAFSLIMQFKERVKFLPWYLLVLQETRKGRTGNFTTTVPFVWKKGDVFSVVRDILETLPQRCRTEEILGPVPVVSAPGCAVRDGYAHLSRAGMFDLLFPSHDILFEIPCETGGTFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDWENRDVFAELLRLDEEMLKIAMLERGTEISGIFSKIFPDCDWLETCDAGTVLNLDGRRYLVGKTPEEALTQGFLSCIRSVRDRLSDDGYLDIIR*