Scaffold Ga0101770

Basic Information
Taxon OID	3300006674 Open in IMG/M
Scaffold ID	Ga0101770_1020725 Open in IMG/M
Source Dataset Name	Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Norwegian Sequencing Centre (NSC)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0101770_1020725 Open in IMG/M

Source Dataset Name

Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Norwegian Sequencing Centre (NSC)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	18556
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (3.85%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

18556

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

1 (3.85%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Ecosystem

Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location
Location Name	Fredrikstad, Norway
Coordinates	Lat. (^o)	59.185359	Long. (^o)	10.970104	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Fredrikstad, Norway

Coordinates

Lat. (^o)

59.185359

Long. (^o)

10.970104

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013091	Metagenome / Metatranscriptome	274	Y
F020881	Metagenome / Metatranscriptome	221	N
F030054	Metagenome / Metatranscriptome	186	Y
F065696	Metagenome / Metatranscriptome	127	Y
F079954	Metagenome / Metatranscriptome	115	N
F090436	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_102072510	F090436	N/A	MKTQKNTQEVKSKVTFENFFLNTFANFEKISSDERKMLKNTNPNFISKSGSTYWYLNGYVYRHSTHFSRDTRTCAWFLEGKSVTNNVSGIYGKCKLEDFVQINTNAEIGKKYKIIYAPKDRKGVATITEGEGVLQKTTEFYYIFDTFKVHKWTLVTLIEK*
Ga0101770_102072512	F065696	N/A	MKKVIYILLILFLISCSKQQSIKYLEQRYYSISHYYNDLDVKIYHICSKYQALHLYNDVKGTIIQEIGISNYHKTAKHRMSIISYTNDIGTCQFQSATYDWLSTKYGINTNIIDPETSQITVMVLAFKDGRQNYWNGYKKYKNSIE*
Ga0101770_102072515	F030054	N/A	MNKREKKLFFVVLVLLAILLFNVESIKKKNQIINTNKKLISSYKERINSSNLAIDSLQNAIKLSKKVDTIIKYRYKQKIDSIYVYTHDDYISFYDTLLHTNIQKSDTFICFDSISIQKLSIKLLECGKDSELLANCYIQNNLYANIINIQDSVNASLEDMYKQKVKKLKRQRNTFAGATLVEFLVILGLITK*
Ga0101770_10207252	F079954	N/A	MSKEKWTKQKILQTCLYLIPKKNPETLNTLLAVIEREGRYFSKPTFYKKIRPDSKEYQQIVEAIEDNNLYLSAYGINKLKFLVDNYNLKAIEDWLRIYGSDKVKQALSRNYNITAKADISFEQEMKKVEEDLSKFSKEELLQYRALRKKLLNNE*
Ga0101770_102072520	F020881	N/A	MTFEELFTVSEIKDISIMQKNINDDIIATLLQNVKEIEFLPLFKNNFFEDFLQRWADGTQTTQDIQLKHYMLLYITKCIEYRAVTTLTYQIRASGIVSMNAENANRVSDNERKNLLNQLNSDKEFYKSQMLKFIQNNYYTHVNSKAYKNFQIL*
Ga0101770_102072522	F013091	AGGAGG	MICKLTNGISLKDCDTPGGVSESYFINIEDVDTLTVTDFQVSALTLKTDAKAYKIAFEPETSNFSSNAVGSQENSSAAFEQACEIKINKVDNNVLKQIDALTKGRHLVIIQKNDKTYEMYFHEGGAKFVANYTTGTALEDASGVTLTATHRQTSNMLLVSATVMSSLTIAEETP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0101770_1020725

Overview

Ecosystem & Geography

Associated Families

Sequences