NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101770_1020063

Scaffold Ga0101770_1020063


Overview

Basic Information
Taxon OID3300006674 Open in IMG/M
Scaffold IDGa0101770_1020063 Open in IMG/M
Source Dataset NameAnaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterNorwegian Sequencing Centre (NSC)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13308
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (13.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location
Location NameFredrikstad, Norway
CoordinatesLat. (o)59.185359Long. (o)10.970104Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020881Metagenome / Metatranscriptome221N
F030054Metagenome / Metatranscriptome186Y
F031881Metagenome / Metatranscriptome181Y

Sequences

Protein IDFamilyRBSSequence
Ga0101770_102006313F030054N/AMNKREKKLFFVILILLAVIMFMSNSFRKKNDIIDFNNNLINRYKNDIKSYNIKIDSLNAVLLAKKNIDTVIITKYKQKIDSVYVYNYNDYVVFYDTLLNTNLANVDTFICFDSISIQKLSIKLLECGKDSELLANCYIQNNLYANIINIQDSVNASLEDMYKQKVKKLKRQRNTFAGATLVEFLVILGLITK*
Ga0101770_10200635F031881N/AMKEFNFKVDRKISTMQIGKNKYKFAIDKSGATDINITQDKIEDVIYSIFDSSEFLDLVRIITNIKGTQKIPKIYLQGLNGSGNGLVDSTGCGFVDTTDMVISDVDISVTKKRMGLELCLDELVNMVLEVHISDGARNENLDINEALLAYFAQVLRKNIQEYAFADSTDGLLTKILAGGTAPTISATDPLEILLALYENLPSGWQTSNEANPVIFINSAMMTAIRGQIFSSTAPITSSIEIVNNRFNLPLTNAVVVASPHMPISGNKMRAVAGISNYLFLATDLESDFDDVRVWYSNDNETIRFSSQVYLGTAVADITSFVKYIEL*
Ga0101770_10200638F020881N/AMTFEELFTVAEIKDVSIMQKNINDDVIATLLQNVKEIEFLPIFKNNFFEDFLQRWADGTQTTQDIQLKHYMLLYITKCIEYRAVTTLTYQIRASGIVSMNAENANRVSDNERKNLLNQLNSDKEFYKSQMLKFIQNNYYTHVNSKAYKNFQIL*
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