Scaffold Ga0101770_1018949

Overview

Basic Information

• Taxon OID: 3300006674
• Scaffold ID: Ga0101770_1018949
• Source Dataset Name: Anaerobic microbial community collected from a biogas reactor in Fredrikstad, Norway. Combined Assembly of Gp0117115, Gp0124038
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Norwegian Sequencing Centre (NSC)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 191854
• Total Scaffold Genes: 211
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 185 (87.68%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Bioreactor → Continuous Culture → Marine Sediment Inoculum → Unclassified → Food Waste → Mirobial Communities In Biogas Reactors

Source Dataset Sampling Location

• Location Name: Fredrikstad, Norway
• Coordinates
  • Lat. (^o): 59.185359
  • Long. (^o): 10.970104

Associated Families

Family	Category	Number of Sequences	3D Structure?
F075996	Metagenome / Metatranscriptome	118	N
F077200	Metagenome / Metatranscriptome	117	N
F088753	Metagenome / Metatranscriptome	109	N
F103108	Metagenome / Metatranscriptome	101	N
F105007	Metagenome	100	N
F105008	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101770_1018949108	F077200	AGGAG	MKFTVIEVKTQPNLKRIEEYARRYGMTPEEALEKKRIGDDYFPIRDQQIVSVGLLNLFSDKEDSVSVMAAVYAGEEKKVLEETAKKLEKIVKATGKPFFITGDGRKYALEILGGRAMAYMIEAKRADQEIIPELKDMIRLITSQKNGYLKPFDFRDSVDLQAMLGLGSDRTPLPDGLKYDNKSLPALAEETKSTVLDMAVNYAAYLEAQGEKIKPVVYKLNEKIFKTVEIFEFPEKKEQEIETDEGDIDIN*
Ga0101770_101894912	F103108	AGGA	MEKTELLIPFTKKLAEAAGLAKETKKGEKFFRCLRMPGYFPPKGDLESFAERLCKLLLEKHEEALLYTEGGLRRILEGFPAAEEILEKLSSSWEEDAPDAYAVVSRSDGEWAVLFGYEDSVEAVLCKKGRTVRIGADEPER*
Ga0101770_1018949123	F105008	N/A	MTAIYDIAREEMTRNGDISLHTADGLFEAFSLIMQFKERVKFLPWYMLVLQETRKGRTGNFTTTVPFVWKKGDVFSVVRDILETLPQRCRTEEILGPVPVVSAPGCAVRDGYAHLSRAGMFDLLFPDHDIMFEIPCETGGTFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRENRDVFAELLRLDEEMLKIAMLERGTEISGVFSKIFPDCVWLETCDAGTVLNLDSRKYLVGKTPEEALTQGFLSCIRSVRDRFSDDGYLDIIR*
Ga0101770_1018949126	F088753	GGTGG	MTECGRILQELEMLKKTNDERLARRLSDWYGFVLSELASGRVGDFIRSVPVDFVALPFNGKRVENLINKCIKTLFEMXXDGRIPFETTAYMAESLRTGRKVQLRYAGQICSKKLGHVLPVVLHKETMTDMILREAKLLALSKVAVVVKLYCRIPGEFYPAVCCLSSDYDIAKRALRNITKDFVRDRMASFPRVDLKKDFFYLESGYGFDENGIIFINKGRVYYRTNDGTHELPDADLDSWEELHMQIARAVAKIIEYEVATEFEKEKYTREDDDWVLEIR*
Ga0101770_1018949133	F105007	AGGA	MEDADVLEGIYRKFCETGDISYRESDAVFRIAQRFFSRKSYLSLKDVVPKWYEKVKREILNGRWGVFVHTVPLGSTEDFYRNLGTAGDPANLARCLTEINYIFREMKRPVCINLVFLRDKDRLCTLGDGISKTLLVKRFDKVNNKNAFRFLRADTLRRLGNFVCIDLDGIKAREFDIACAYRYEMEEKNCAVDRLAQVYAAVFLELESAGIKFLTCSSRAGYAYGYLDELSVFADEKDVERIEGALKTADCIAESLKGAVKEFSVRDLYLFSPAKDGEPSMNDPYFRKLVKSHISQFFPEKRKDAVEEEEWVDVIR*
Ga0101770_1018949165	F103108	AGGA	MEKTELLIPFTKKLAEAAGLTKETKKGEKFFRCLRMPGYFPPKGDLESFAERLCKLLLEKHEEALLYTEGGLRRILEGFPAAEEILEKLSSSWEEDAPDAYAVVSRSDDEWAVLFGYEDGVEAVLCKKGRTIRIGADEPER*
Ga0101770_101894939	F075996	AGGA	MLNSATGQAVGILLPFWSYIPTDRISPKGLLYPVSQVMKEGRLFRFVMLVGEPEEEVSLAGKDFFWQDTDRMYRPKYCAVDITADFKGRIYTFTGLYARRDGLYVNGKRAGSFEDTRDIFVHYGLGEVWNLITGDIRPSCCVYKYGRLFVPETEVCLGLLSEKAQFPKGYDMKDLGRVERLLEDAGVFKIPEEISLAEVEEKLSKFSDLEKILNEFSAQDEETLLR*