Scaffold Ga0101728_104057

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_104057
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5936
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001594	Metagenome / Metatranscriptome	666	Y
F005148	Metagenome / Metatranscriptome	410	Y
F007647	Metagenome / Metatranscriptome	347	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y
F077390	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_1040573	F077390	GAGG	LGEDVWILLPRDKRHKLKDEAELPEHTFFYRDMDKDRGVIGKV*
Ga0101728_1040575	F007647	GAGG	LDQVKVNEVVNEFFNSLKSEEDKMLETGLTNNATVEVLHQAVVQLCQDHPKRFEQYVKFFEEGCMYLQDESDELPEVEKC*
Ga0101728_1040576	F001594	GGAGG	LEKKKLTKDEYLDALDPDKLNLEKKXXVXFCHGCIDEWKKNKLGNFKFIVSMXLILAGVRITPDDVLKAVWKKILVWFWDLQYQNALAEKEGMLKRLAGIGSS*
Ga0101728_1040577	F008755	GGAG	MNKSRVARDLWRKVFNENIIDLKDGDARKQVVSEFLNDPINIKSGWRKKDSRFLRLXFQKXAKEQGFNVMNIGLNPTPIRSKTXKGSLNINVKSXQKNPSPMMDAIKPPTEQEKKSGAIPTTPQLEXQQAQAVQYSAQSVGQIFETXXNIXSARTGXSPLXXNXRIAXGEAWSPIFNIYFAGHSLWVMPIVISAPILLSRVAEMSKLKKEREIKERYGMDEIPKDEPVKKKSSWEDMSFGKKETNKR*
Ga0101728_1040578	F009404	GAG	MSNNNEPEEVQPKGESLVKYCAICGVELEDTVLTXRYWXCLSCESIFQVXVRTGE*
Ga0101728_1040579	F005148	GGAG	MKQKEYEKFLKRNLPKSEEVECKKCGRKFYDDFNLVCLSALDMCLLCANRNLDKPTIERAYNVKQ*