Scaffold Ga0101728_103067

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_103067
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6309
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001493	Metagenome	683	Y
F002715	Metagenome / Metatranscriptome	535	Y
F002745	Metagenome	533	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_10306710	F000245	AGGA	MKTFKEYSLDRKLDKAVSDEIKKRKLAKFPVNATDDIKMRMKPNKPAFTFPSPNSDMMIQVFLKKMLPSKGQPKGMMAFNYQFEDK*
Ga0101728_1030672	F001493	GGA	MINFNEVYYKSIIKEAVAWTQSLSTMLFDLPRAGFKDLKIPLSSPIFKRVWPXTIRSKVFHVTDFDGVXKLKRLQGGKXSXSAFYNMDDYIIQXGIKTXGGYVVELXGDVLAAAPDDISSQPDKTGRRWLTLSTIMNTSTASDPGLGGSNKLKKMEDDLGRLLVKILKKNGEDVDEGSRDNIIGLQWSGLGKKHGGKXKSIIIKDXXDGMEKIMKKYSKPLGALLTDYTKKRTLDPDSDSGEKAMWDELVVNNFKIQKIHVGPEFADDFEDDDDIDGFPFELYDTPEDMVDYITRTVQKIKL*
Ga0101728_1030675	F002715	AGGA	MPEHELQSVKLEVGLLKSEVEVRGKQIETLLQKLDLTADKLQELTVQIIKLNTRQEDYLRHSSTMSEEFKILHTRIGDLHDKQLAAHKEIEQRLDRLDQYKSKLMGMIIVVGGVVGTIVATAISVFLKD*
Ga0101728_1030677	F000245	AGG	MKTFTRFKESKLDDRLDKIVSDEIKKRKLAKFPVNATDDIKMRMKPNKPVFKFKSPNSDMMIHVFLRPMKGKKGVMAFNYQLEDK*
Ga0101728_1030678	F002745	GAG	MKSFKGYLTEFAIQSTSDYVFNAGSDSSALKIPISGPMFKRIWPDTIRTTVFHATDLKGLANLKKLEGGKKSISAFFSMMSRYMETGVATEGGGIVAEMDADVLVSARDDIMSEVDKQGRRWVMMSWFEYQTRERSKFGKIEKDLNTLIANLVKKHLPKRMKVIVQTKHFGKDSGAAFDIWGNMKKHLKGDGKKLRLVIKDYFDGVEKIIKKNKKVMGDIFYGYAKSKRMTDNXWDEQIVNNIKXKKVHLITFTETPNKKEEEIIEYVNSTKWPLKTWTASIELEIYTRAVIAKEIGRKIR*