Scaffold Ga0101728_102277

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_102277
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8135
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001606	Metagenome	664	N
F001712	Metagenome / Metatranscriptome	648	Y
F028523	Metagenome / Metatranscriptome	191	Y
F047719	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_1022773	F047719	GAG	MXESWKMVTDDTGLLQXAIRVIKIXKFQRYCLKCGKILPTVIRLNYVHNCEXPDFLL*
Ga0101728_1022775	F001712	GGA	MSASAGQPIATRAQNFINSLSGRITGYNPFPQTGTVPQTISIDGIFNKWSGIGLGAWIYGMLPVKQLPQXXKAKTLGKALLSGGVLGGLFSTGXPHNTNLLTTSRPTLALSSTEVSYT*
Ga0101728_1022777	F001606	GAGG	MTYGYDDATFTAMSGVTXVXXNSGASLTAPDPAHGXXAVIPXXAELGAFTTXQSXFXAFRVQSDXVAVXPKXXVXPNVNTGDAAFTSVAAPALLAYPXXXPXXGGEHIXYXGXPLVXNTVEPGIGATVIXXTTGTNGAXSYXQRPTXETAXXTXINTXTXQXXXIXITGGXXXTGXYTXVSGATATASEXXXGFXXXVSPDFDTSMPYRVAVQPTFTGLGAAANAXTGGGGIMQXXMPRGQGIPXAXKVTXTTYYTNRDARAXGASNFXNFVXXTK*
Ga0101728_1022778	F028523	GGTGG	MPXXNGEIQPSXVKSLAVYXVASXGTDLFLPLTDVGLTETALTFSGVTMTRDTSDSNQPLDSFPRVYSDTDSGLLLNEGNDTAFNQTYTLDPDMTAIIYKIIS*