Scaffold Ga0101728_102047

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_102047
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7353
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F040140	Metagenome	162	N
F066859	Metagenome / Metatranscriptome	126	N
F068933	Metagenome	124	N
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_1020474	F066859	AGG	MVHELPDNXGXVQTXINTSRAGYYXSNFDVXEXVTLTPQGGGTXXXVLPPGAXXXXPDXXGMXAQGGNXSRNYVFLMWTAGYAX*
Ga0101728_1020475	F078831	GAG	MVXTNESIYGXHRAFTSXQQNLVLPGAKSKYXEAISITINGLQXGGXVPTIAAALGLVNPLEIDVGGIPQXXLRLSXMXAXXMLWLQHNPLTKXSAGXXXEWIVNQIVYPCWFPPSRAXATLXATXAXVTXADNTEISITXEYLDGIPRNXALXYSEFSRNTDGVDSXXFGNWTQTTXXVGNMTGMLFNSTTIPGGSILMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNXLXXKSCKHFXFR*
Ga0101728_1020476	F033842	N/A	MANGMXILXXXTKPXKLXDXXKLGMXGAAGXAAATVALEAGTQLLERFVLDPYLPQAANIMNTVITNNAPGLGTVXVRDAXVLLPAEXQVYAMLSKKDKQNHFINALSSYVTKIXLRRTGLNPKEIADKAEKIITPRTMLPSVM*
Ga0101728_1020478	F068933	GAG	MSKLGELKRLHRELLMPKALPGMKGTIGRPSDLIPTYAAGQLKGYWKNVKHKPATGFQVSKKNKFKD*
Ga0101728_1020479	F040140	GGAG	MLECKLSMPKFGKKFEDTGYDGSHHWKVLHDEVNKIECDYCKEKGVKLMRGLHDSVNLHLGKKAQHPKDLDFALKHFVWSKKQLEPGLKCELC*