Scaffold Ga0101728_102003

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_102003
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9819
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074980	Metagenome / Metatranscriptome	119	N
F081441	Metagenome / Metatranscriptome	114	N
F090505	Metagenome / Metatranscriptome	108	N
F090506	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_10200310	F090506	GAG	MRMGVTDLHSCNISSDTRVYITEKAILSMSQINENIPRLEKAWKLLEEGKVFLNRKNPLRAIVKGSRVNYRVNIAAQDCQCEDXXYRPDXVCXXIRAAQLARXIQIGAITLEVKN*
Ga0101728_10200315	F090505	GAGG	MAXTXICSQGCRVLTNYEIWLSGNGGDIADSKLFSIFLEEWSRPTLGQQLKIXGTLFQVDRTDPTSNPAGQMVKIFVSPYNPNKPFARSMRIGRRMRDSVRY*
Ga0101728_10200318	F081441	AGGA	MVLSSREKFVAFYSMFLTTHIGLGVNPAELDXDGMGQVFNAVLETVXKSTCPDVSEDEVKAIAEDFNXEMFKXRTILDEAVRSQRLGDRV*
Ga0101728_1020033	F074980	N/A	MSNQSTIDEGPSDKQVAFLRGNTLKYTGEIPKTKRQASQLIQELSDKAGIPRKPNPSYTPKPTPVEDLSIVHEEATEEDLKYSEPLLKAAAKFHRLAVTAIKKRGEPLRGDIINAERNFLVKVEKLRSCNNG*