Scaffold Ga0101728_101795

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_101795
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11175
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (48.28%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002100	Metagenome	593	Y
F002150	Metagenome	589	Y
F003270	Metagenome	496	Y
F022428	Metagenome	214	Y
F025299	Metagenome / Metatranscriptome	202	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_10179517	F022428	N/A	MYLALLRGXXXPRXKXIXXKXENTIFVMNXMWXMANSKDYGFQPXRQFTTKLRLFSX*
Ga0101728_10179523	F003270	GAG	MARKRRRTKKNKSKHSSIKSIIRKVVNQGAAPLAFWQQLSEKDYTVLNATPEYRGLDYLGKLKVAANILTGSLTGRVAFSDQYNPSPSGQPRINPAGIINKWTGIGIAAKIYGKIGRSMKLPEAASIDRIGSKVIFGGAVGGFFDPPSPAGRITTYAVSPNVRTQNIAQTRRTYXRRMSNVGYTPPDSFDYSTGSAFR*
Ga0101728_10179525	F002100	AGTAGG	MSSFKPALIKPTYDVANFGHDTTLPLNCLSGSTTTLTPSTATFVQVLEDSRVPIDEVDXFITDSDKMXXVHAGXDTXXDXSWEWSPDMSAQAYQLSFSXAVGMKVSAYTSGNFKIDDIQVVCNQVGGGEGTVTVLNKIIDPGMSNMTSATXQVAIINFSTKTSAKVXDKPLTFQIKVNTSSGSGTXQCGLIPLFCYFGAAVPKTWTTSSVLXHIHADLAHAFPIFRDEDNMNMLDTGIGV
Ga0101728_10179526	F025299	AGG	MXXEEIPFFTEFXLLGIXLGFGYGFTKLFLNHARDKNKVRRSERKAKEANGLEDELDXYLNNAPQIAQKIQAELDYLKKNXATPEQMKSLESKLELLNKVQQYEIPLKLIGKPLFKKIVSIIDKVGV*
Ga0101728_10179527	F002150	AGGAG	MVSLTAAQVGVGVARKGKEKVGELYQEKFGYNFVDLVTKLALFYIVAFLIAKYMEAVIYFQGGLATIAGFFGIKFAQADQLPKQWVELFVDTXXQTFTSTPTAXGXFNPPGWDKPYDYGSVQHQEAEPYMFPQKEVKYKFWDLIXAIVIFYXGWEAYKYYXNASKDPNKKVDLLTLAIFSLLMLAVGVLSFSKFLGRFSFXRXXEXNK*