Scaffold Ga0101728_101291

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_101291
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9730
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (52.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002743	Metagenome / Metatranscriptome	533	Y
F047901	Metagenome / Metatranscriptome	149	Y
F067829	Metagenome	125	Y
F076479	Metagenome	118	Y
F105323	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_10129111	F105323	GAG	MNLKSKSTLFHTIIERVDQQLAGIPLNDSEGAPLEDSTDLDMHIDAIKEMKITNAKGDVIHPFSTSVATQLVYDELTERRDQN*
Ga0101728_10129122	F002743	N/A	MNKEEKTYHDLLDHVLHLLEHKLPVEMVAAALMSIAQRLYRTHLSEEDYQRIMKVAYETNVKPYDISKGTLH*
Ga0101728_10129124	F067829	N/A	MVKKIPQQYEIGEEMPEEDKSVTIDLRRHKFKSKIIGEIPHGLTKVQEETWKLKNQKK*
Ga0101728_1012918	F047901	N/A	MKYYRIRVXVQGQLYIETIEAKDIWAAFKILIKXASDGLMKVKETVGFYQRKQVQITYEEVKDGTTTISANEVRPGTQVGKEGFDIAT*
Ga0101728_1012919	F076479	N/A	MFGHICIENSGPFDKCWNIYHTPQIRYSSERTCMKAASDYLHGAQVYYRKQDVAVSELELYCIGINPINPV*