Scaffold Ga0101728_101272

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_101272
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11448
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009892	Metagenome / Metatranscriptome	311	Y
F046425	Metagenome	151	N
F081432	Metagenome / Metatranscriptome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_10127224	F009892	AGGAG	MTRSQFLTKLEENGISLDESRMHEVNYYFNLWCDTQKQSRKGLMDESGFPAFITWMKEQ*
Ga0101728_10127225	F081432	N/A	MIFAAGWTQSIDTDGSREREDLASFISDTFKAINGIRPRWWDLREWSLADLRAEAQSLEDEVVESIKQDKRDAHEQMLEANRVAVIYRAAKKPVSRTFKPFANLKEMLV*
Ga0101728_1012727	F046425	GAG	MNLIIDKGCFKIYYRDPVSTGNRLFLSAHTATLMDAVAEFNLIKGGFDTPLRVERYNFDGKLTDVXXMXGRYDVPRRKDXAYSLDLVDRMGI*