Scaffold Ga0101728_100304

Overview

Basic Information

• Taxon OID: 3300006654
• Scaffold ID: Ga0101728_100304
• Source Dataset Name: Combined Assembly of Gp0125100, Gp0113270, Gp0125099
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: The Marine Biological Laboratory
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21041
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Abyssal Plane → Marine → Deep Marine Subsurface Microbial Communities From Mid-Atlantic Ridge (Iodp Expedition 336)

Source Dataset Sampling Location

• Location Name: North Pond, Atlantic Ocean
• Coordinates
  • Lat. (^o): 22.78
  • Long. (^o): -46.09
  • Depth (m): 4350

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033219	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101728_1003043	F033219	AGGAG	MQIKFVKEIPIINGTYKKDTPNKDIGYQKWQVRKTYEVDMVYEIVTKTKEEAEELLEKKECIKVENVDDYGKTFRETITGRHVNDMAGDEPVTYKKIEECIPRDDEDIDTEKRFYFFRDY