Scaffold Ga0075471_10024699

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10024699
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3517
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024770	Metagenome / Metatranscriptome	204	Y
F041730	Metagenome	159	Y
F053995	Metagenome / Metatranscriptome	140	N
F056549	Metagenome	137	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_100246991	F053995	N/A	ANVNRLSKGEVAVGALQVGDNDMVYGIEFGTVSIDPASINATTRGGTTFTLTGAATTDIIIVNPPSDLNDDLIFCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTE*
Ga0075471_100246993	F024770	AGGAG	MAVSHARVSVGTTATKLTSDYDGKDGQTINVQNPSTSTTVYIGGEGVTTTDYGFALAGGTSLSVELQDDEKLYGVVATSTQTVNILRQGT*
Ga0075471_100246994	F041730	AGG	MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALDSADAAAYVSVDAYQALLTRYNNAESIRVLVVDADEEATDASTYATDASKAASALSNYNTNQLMMMGV*
Ga0075471_100246995	F056549	GGAG	VAEPYVPIARYNTSNALLTELEVTTNDAETYTDDLETAVNNTLTHKQTAENLVASKFDLFFLVGC*