Scaffold Ga0075471_10008027

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10008027
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6605
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006543	Metagenome / Metatranscriptome	370	Y
F012108	Metagenome / Metatranscriptome	283	Y
F043359	Metagenome / Metatranscriptome	156	Y
F074795	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_1000802711	F074795	GGAG	MTREQAIIKILKVLKSPMMVMNKHNRDEALTLAEEHGINAKDLIEVWSNMAMRI*
Ga0075471_1000802714	F043359	GAGG	MEWNNSHKNPPKQGQKVYYFGPNIGLWIGHYSYEDERSFTPYYYDENNVKVYEEKVVELCPHVFTNVNAGVCDACDAPFWLPYDEERAKSWCPIIPEKYTKDLYD*
Ga0075471_1000802717	F012108	AGAAGG	MINLQLTVAEAIDIANTAGNDLHDRIVKAIELALGVNQSRIVTITGGLTLDNRIACIKAIRLATGWGLKESKEWTDYLVGGWKYDKFVPAPIGAKQSITLSTPQAAENLLRELTSLGCKGHLA*
Ga0075471_1000802718	F006543	GGAG	MKKFTFAVDVVADDLDRDSVVDSIRECLSSNLPSDVHANVKAGEIKAFSEQGYKVWRARVTGVTAEQAGDAHNAKVEAEAVA*