Scaffold Ga0075471

Basic Information
Taxon OID	3300006641 Open in IMG/M
Scaffold ID	Ga0075471_10005175 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	8350
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (60.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

8350

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (60.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F048283	Metagenome / Metatranscriptome	148	N
F063654	Metagenome / Metatranscriptome	129	N
F063657	Metagenome / Metatranscriptome	129	N
F066734	Metagenome	126	Y
F078664	Metagenome / Metatranscriptome	116	N
F085612	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_1000517511	F066734	GGAG	MRVRDLVQDALWIAFTASLAWMRSAGRHWRRVVAVTTMGIAIARAVIWIAKAVASAGTVDAFLNLIGLGAYVQPFEQAVDSALATVVAIILTATPTG*
Ga0075471_1000517512	F063654	N/A	MTLERGLAMKARTTKVRATLAPRMDPTRYTHSYVVNAVPQYRGFTVNEAERTITHLGLITWNQEDREWRNVESAQVVRLSECDGSYTIRIVGPMTVRDWSAAKLRKARAHNGEWRDVWTGAAVDGVTLMEAVARLRALRDAMQEDADAYRRGL*
Ga0075471_1000517513	F085612	AGGAGG	VSVTDPEYDGEIVTLGIRIFEGVADDLPRWQPWIAGETAHRVASLYRVGANHVKPTSATQGSMRGVWEIILRDGRYAVVPRGGGRDAETDLGTDRAVALAHLEERLTALTAVEPRGQMELGL*
Ga0075471_1000517517	F048283	N/A	VTVRWSGGKAAPDETTKGEQVEIEVTYTPALIGVGPEVGDDVNASCDAFEAQVHLELSARYPDADITVTRDHGHLADLSVVTHGFVDQRGVLTTRQAVWSDVWDMIGPYGRYRRPVRGGIRQASVPVVVVRPASRADVFTILVDDGFGDSVIECDEDEARAVMRSGFGVMA*
Ga0075471_1000517518	F063657	GGAG	MNGDLMEDVVTEVSVTGAVTTDGRLRFRSPLDVEAWAHDHLVARLAWDFLIDGADNGVPRDTDEALERVQVKYIPEAVRRTMRGRLSDGLYLTWAVYGLDDGRQVEFLERAWHELRRLIARGDR*
Ga0075471_100051758	F078664	AGGCGG	VATIASLWAKAGGSQSGLHELAAIARKHCPNGRAFATSTMAMQSCGCPIHAYVRSEPGLYRLAHTERNRDAYVSNEWDLWSREDDEHVSPD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075471_10005175

Overview

Ecosystem & Geography

Associated Families

Sequences