Scaffold Ga0075471_10001891

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10001891
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13845
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015080	Metagenome / Metatranscriptome	257	Y
F027828	Metagenome / Metatranscriptome	193	Y
F091925	Metagenome / Metatranscriptome	107	Y
F101038	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_1000189111	F015080	N/A	MFDQLTFVPHLNGIPGAIGARHKFSNGWEISVVSGPAGCGLYGEINKIVGAPDTYEVAIFRPNGNMTDDVSGWNTSQEVSAMMWVVSQF*
Ga0075471_1000189120	F101038	N/A	MELTKSFPPLDGLVEFSNKKLKEFDYVQFGQNVIQFAATFAAIVVGVVSYVWTALQLWWEDNGEATQVNFIRFVVNVIDFIGAVVTETPKVYRWVKLNGNRLIDSLFFQVAFN*
Ga0075471_1000189124	F027828	N/A	MKTMLDKVLMVEELLNEKQLNALRDMLFVYKDLQKEVHDYPPEDTLFTQTQREVFEIFDID*
Ga0075471_1000189129	F091925	N/A	MTHISFTSGQILDIISALEEKENELYDAGDKHLAAYYMQMGAQFQRVYDRLQDVVPEKRVAELVLAH*