Scaffold Ga0075471

Basic Information
Taxon OID	3300006641 Open in IMG/M
Scaffold ID	Ga0075471_10000808 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19567
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (89.29%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

19567

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (89.29%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001991	Metagenome / Metatranscriptome	607	Y
F006660	Metagenome	367	Y
F050326	Metagenome	145	N
F099179	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_1000080823	F001991	GAG	MAVFNKNTLTQVSGFDNQIIAGELVFNQKTYWNLTLNNSDGTPRNLTGATITSQIIRRQLSNVRDSRYGLTFDIADYSPPPSPISLTIANQNLSGGSFTLVIDESAWSVVSTDTQLDINASNPVGFSGNITVAIPASGSTPAQDLIIFLLFLVRSNGVTN*
Ga0075471_1000080826	F099179	N/A	MRYATKYDMPHLIEMMKAYADEAGIETLKQNQNEGHVKALFFEMIKGRGFVLIDDQFRGFLAAYVTSNFWNSSVKELHEVAWWVVPEFRDTSVGGKLWLRFNKLAQDMLDQKRVQIVCTSLMPNSPNIDYTRYKFKPMQATFFRE*
Ga0075471_1000080827	F050326	GGAG	MSTPMAALSSASITHGEFVRLTTSTATYTFCNAAAPVVADGISFTGLGSLLSVGAVNREIKATSIDMIIGLIGIDPTNVFLVLGSNIKGSTVEVWRGFFDSNYQIITSPTTQFFKRYQGIVSNISITEDWNDNIRSRTATASISCTSFRSILENRIAGIKTNLSTWQQRYASDTSMSRVSAISGQYFDFGAPPKSGSQSDPGTVQPAQADINDISQAG*
Ga0075471_1000080828	F006660	N/A	LRSEIALTARQSMSFQTILDISQTITVNNRRMVGQQYSRSGQVRTALYVTSVPWVFTVKPHSFLYYPQVRDVIQTIDNLDRQTAATITFSSTNLQWFTAYQGQLSGAQAAALTLASLPAGNATQIAIGNLPAVSSTTIVFKAGDFIQLGSYPYKITTQVLRGSGSTVNATLHRPIIGTPTVGTLTAVGSACTFSVVAEVCPTYTLRPMTNGAFVDWDADFVFRENVQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075471_10000808

Overview

Ecosystem & Geography

Associated Families

Sequences