Scaffold Ga0075471_10000111

Overview

Basic Information

• Taxon OID: 3300006641
• Scaffold ID: Ga0075471_10000111
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39417
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (78.18%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F002085	Metagenome / Metatranscriptome	595	Y
F002997	Metagenome / Metatranscriptome	514	Y
F055675	Metagenome / Metatranscriptome	138	Y
F092064	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075471_100001111	F092064	AGGA	MKRKPPRQIIGYLKDPSTWDAVAFETAIRNEVENTTGPLTASDEVLIGSLVIVMATMLDAHVNVLAHTPIQQYASGTAPSAWYKIRTESLDKIIKVLAELALVARGRPKKNNKPTEVDELFAES*
Ga0075471_1000011119	F000934	GAG	MSLQTILSICESVGINDQRFVGQTLSRNQKITTSEILTVVPFAFDMRPMNYLLYSQNRGTLNQLRLADKSLTQYLNFGSTGWLNYIKYQGEMTSVQIATCQWQITSANKTLVLGSLPSVGPTVVLFRAGDFVQVGLYSYIVTADVLRGTNPTVNVPVHRNLISALASTVACVAGEFGTTVSMGGTTYTGITFPVVLRDYPTYTLVPMTNDSFISWNGSFQAFEAVL*
Ga0075471_1000011120	F002085	AGGCGG	MNIITPVEDTNNIRIADFIRINNGTDIFRFTTAGSNQLVPAVDATEFSAVGTLIKVGNVQRDIKSTANETTVTLVGIDTAMLGFVLGQSVKGSAIQMWHGFYDTDGVLIASGGSGGLYQFFSGYITSFQISEQWMEDVRMYAGTITVSASSVQLILQNRIAGRYTNDNAWQFFNPGDTSMNRVPFIQNINYYFGKDAPANS*
Ga0075471_1000011130	F055675	N/A	METEIDPIKYGVLWERVQAMDRKVDKMERQLEELVALANKGKGGFWMGMTIASMAGGIITWVAGHLKGG*
Ga0075471_100001119	F002997	N/A	MAITRYENISVNNLAFAKSDFGEQTTTQSLWFGTRAVIHSVANHVKIAEKYRVYSDIVQMTLNYTPNVKTIIDNQNAYSITWRGFDWRIDNVRESDDRMSATLLCVRNDPVVAV*