Scaffold Ga0079301_1036760

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1036760
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1627
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015209	Metagenome	256	N
F015472	Metagenome	254	Y
F033793	Metagenome / Metatranscriptome	176	N
F039133	Metagenome	164	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10367602	F039133	N/A	MNTTDKVIVKFKSRVPKMLYTAHYNGILLASGRDPIDLGEYYACKYCTEWILQDGNKFYTQRGVSN*
Ga0079301_10367603	F015472	AGGAG	METFYLNNGGTRWYSAGKIQVTGEVNGKSYDRMRQPMFWEQLGNFAVCYVRVGRTVFCGFTNDNDGTIQLKLEKCRVVR*
Ga0079301_10367604	F015209	AGG	MSNYRQKALSLWSNLLAEKRWHKFESTNCKPSCKGWNGWAPYCECFENFCTFVPQGDIEDMELVIKTRPITF*
Ga0079301_10367606	F033793	N/A	TNPMSKVYRMILGQDPNSTRPIGTEKTLKEAKEYILSRSYNNDYCAIYVADNENPAGELVGRWIVKNKKLTSFEKKSKPIDYKKQIF*