Basic Information | |
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Taxon OID | 3300006639 Open in IMG/M |
Scaffold ID | Ga0079301_1032333 Open in IMG/M |
Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1758 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Ohio | |||||||
Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F070119 | Metagenome | 123 | N |
F071246 | Metagenome | 122 | N |
F072347 | Metagenome | 121 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0079301_10323332 | F070119 | GGAGG | MNLNSYSAFDFVIPNCLEPGDIIQWQEEIYTVKKFDLLSDGFIIYAIDDMEEEVELLIPDNTVLSLMEEQ* |
Ga0079301_10323334 | F071246 | N/A | MLEWDTMGKSQTESVADKIVALLADGRISQAQWRLWIPRRITENNKMVIANAKNFADGINEIIADEQITLSKELIFDYQTGHDNGQ* |
Ga0079301_10323335 | F072347 | AGGA | MDNRTKAEILVQFTQDEFNSGEYDEFFDYNDLGIPLSIAIVQDMVILTDSGEELLEETWKELCLLFDANPEDEYESIDDLTVK* |
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