Scaffold Ga0079301_1010912

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1010912
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3376
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000710	Metagenome / Metatranscriptome	925	Y
F002259	Metagenome / Metatranscriptome	577	Y
F006697	Metagenome / Metatranscriptome	366	Y
F010159	Metagenome / Metatranscriptome	307	Y
F019128	Metagenome / Metatranscriptome	231	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10109121	F019128	N/A	FLKQPEIAAGMAGYSGAKIGQALLGADSAIGSLLAENAYAVSPSMYLQGYDTPGLAGEGIYASNYTLAGYDVPGM*
Ga0079301_10109122	F002259	N/A	MGMSAQDKMIHVANRLGLTTLKDMQGTTRMVYDSQTTAALTHTLFKGASQRTFPLTNVGANGNQFQVDEALLVEKIGFFVPTAADGIDYNGLGTGNLSVKFDLVIGNKTVIKDATCELGGEQAFYNDGAALSSVIDLEGVGILIPPQVEYYVAAKTFDAQTRVATSQRLGCYLFGTGALLNFNTTI*
Ga0079301_10109123	F006697	N/A	MANQVQKLSYVDAKLGVGLPGQQTTRVIYDSVNATAGQQFFEFFTNFAGKNEFQTNLTTNKLDSAESMVIKSIQILINGATANLAGHLNLNITVGNQVVIKDFDPSFNSTNRGLSFDRLHSGASTGGILELRLLTDIVIPPQVNFKATLQLGSAAIALNDDITIVLKGYGRIFSAGNSF*
Ga0079301_10109124	F000710	N/A	MASNMNISYRQGIRNKGFQVTVPTTGASQTLSLSGLAKAFEGIKFSSTTSAAPATLVNAMQLRVTLTINNDVVIDDVCAHDLGASTGAGVTSGFPNYIPFPRALTGQDTILLRVTNSSGASQLLNVVVFYKNEI*
Ga0079301_10109125	F010159	N/A	MSWQIPTLIEADIKSGKAQYRTFQTGNGGQSILPVPSNSYVVIFGYDFSPAGGAFGAIGDSVAVANGNPIRYTSLMQAFETQQISFYTGTDFYPFIHHVNINSRPFVANVNAVLPDDNITTRISLFNEVDNTPISRQVYITSTNDVTITHGLIINATRASANAIPVTNRTPQGLTYGGSPQVVNTQTNYGSGATPQQFMQPSPKDYQDFAFGLLPANADGQAFATPDSTNGLRDATEYINANFGLGFLNLAGCHYFLNLHYALYTETVPESRG*