Scaffold Ga0079301_1009596

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1009596
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3650
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052556	Metagenome / Metatranscriptome	142	N
F063632	Metagenome	129	N
F065720	Metagenome / Metatranscriptome	127	Y
F101045	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10095962	F052556	N/A	MIKLELTPEEANGVLQLIDIAIKAGGIANAKVGLPIFDKILGAANASGIPQAPAQAELPLEK*
Ga0079301_10095963	F063632	GAG	MKSAIEFVGNFFQNNGHLRGALYFSIAALTPMSAAFVEWASQDGPKNWYEVIALILGSIISGLTAIRAYLDNHLSKTKETK*
Ga0079301_10095965	F065720	AGGA	MSFLSDLIMKLLRWFYELSQKDTPCEDAKKDDKLKQNLLARIDDHERKLLIESDLRAKRTAAEVSRAGQSPRVDFRLKRPSGVVKK*
Ga0079301_10095967	F101045	AGG	LAISLLSRDVTFNVFTELQDYTLINSAIENIPQEIKVRIWPRDLIDKTKLRRQNCEVFFIPCITLSWVQKMRMCARLAREAQEPWFGYAHDDTTISSEDFNKLIEARKTVNENTYWIVTNNPKHPEINADIYALINTKNYWAIGGHDENFHMYYADIDFHLRQAQNGKGQIGVCTPSTTHIGSVVLKKLEGLQSIYYKMMLEKDRSYFKAKHPSFDI*