Scaffold Ga0079301_1007527

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1007527
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4238
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022399	Metagenome	214	Y
F023329	Metagenome / Metatranscriptome	210	N
F031460	Metagenome / Metatranscriptome	182	Y
F084156	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10075273	F022399	AGGTGG	MDKKYKEIYSKNGLQVFVNPEDYWADYKVRLNGYHAKTFYGETAWMDVTRFVHDQAMEFYDFDVDGIHRQWKTDLIEEIERRFSDAGL*
Ga0079301_10075274	F084156	AGGAG	MQDYDLCWYDTKQGDNCQWECSDIPGQFYCKNCDGLRVWNRFAQAYSFYVREGHYA*
Ga0079301_10075277	F023329	GGAG	MVEEDKELRQLQSYFKYNISTDEILSGRLKVLMADLSWQMDMPTWTKEELDIMCARMDALVEVSNLLYDIQWHRLNWERKTNGKSN*
Ga0079301_10075278	F031460	AGGA	MAKVIDSVELNLQMWSTVVLSAEEIQDIYPEFADMTDFEDTDELEQALQDHMDMNYYEYVDNADGALNECTVHFVYEDDGSE*