NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1007273

Scaffold Ga0079301_1007273


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1007273 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4328
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007525Metagenome / Metatranscriptome349Y
F016662Metagenome / Metatranscriptome245Y
F070119Metagenome123N
F071246Metagenome122N
F082675Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100727311F016662GGAGMTYLVATTEVIYSEEDLIKKMLLTGEYGIHGYPISHEAMVEFVKDQEWQIEHNLFLDKFDVPCQISIKDEDGTDLFFAKNKLEIV*
Ga0079301_10072732F071246AGGMGKSQTESTADKIVALLADGRISQAQWRLWIPRRITEHNKMIIANAKNLADGINEVIADEQIALSKELIFDYQTGHDNGQ*
Ga0079301_10072734F070119N/AMWRRCKMNLNSYSVSDFVLPNFLEPGDIIQWEEEIYTVKNFDLLSDGFIIYATDEMEDDVELLIPDNVIISLMEEE*
Ga0079301_10072736F007525AGTAGGMKTLEGVTVEYTMTIPTSKQMPEFYVWQEGAESYATITYLDRVVEIERNGEMHLTLPSLVNGELSDEGADVIRYSDDLEAAGFSDDIQLMQFIKTISNSGFEIYRMNPWWEVFAHNEDMGEVYDTFYEAIDAGIDHITDDRNWD*
Ga0079301_10072737F082675AGGAGMSKQYHWVVVYDEDWGAFMVDAEGELLDRDRLLYNKESGKWEYLEEDTEQEAEYYRLEEILAYNLTRLDLTKKV*
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Biomedical Sciences Research Center "Alexander Fleming"
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