Scaffold Ga0079301_1005612

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1005612
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5087
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018914	Metagenome	232	N
F026545	Metagenome	197	N
F088791	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10056123	F018914	GGAGG	MAKQDKFTVLRAWVAEAQTVMGLDHWEITIVEAASDVDAWADIDAHAQQPTADLRVAFDFWKQEPEKQRLILTHELLHLVMARYARISENLEESLGKLAWAVIEPQLEDGEERTIEHLARIIAPYLSLPAFPKA*
Ga0079301_10056124	F088791	N/A	MPQFGKSIHWARERYYGGTFVTDADLYWINARVNDESEIEHSAKLQRYAAAVDLMCRVCAGDEDTTPSCWDQTCPLRSVSPLPLRVYK*
Ga0079301_10056129	F026545	GGAGG	MAGVKTKRAGAAKPPVWTVTNCTECGKVIDYTDPKRQVFPATRVLVIHEKGRRFEWRHKACVK*