Scaffold Ga0079301_1005425

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1005425
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5186
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011074	Metagenome	295	N
F019816	Metagenome	227	Y
F020348	Metagenome	224	N
F033030	Metagenome / Metatranscriptome	178	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100542510	F020348	GGA	MEIEHRNFLDEHVGNWHTVQNGYVRNIDLDILKMYEHIYRKYMSPDFILTVWCGNCIFDMIKRLYTWYEAQPNDDLVITFITDEVKKPKKRK*
Ga0079301_10054252	F019816	N/A	MRELLPFERQMLLAEIYHYAWYSEVAYKDLLEFIEKYQNVIDKPVFLTPINNNDTETTHLEPLAFGQDLDTNPGSNEV*
Ga0079301_10054253	F033030	N/A	MQEKKWSAGAWKKQTTKGEVINFTINDVKYSMWVNAYKTEDKQPDYKIYINDFKPKEDTGLPF*
Ga0079301_10054256	F011074	N/A	MEQEIMTAFSGDRVRNVNQIILHQNLIYIMQLVGINVMPDKVKLALLEDWIRSQYGNYTINEIKVAFKQMVANDFIDHYQNFSPAYFSQVMDRYKKKANEVRKMMPQERVEAIPHLTDLEIIDYSYQEYKVLENRTFDRLFNPLSVFTKLNSSGIKVWTKEDGALAKKKLMEIITYKANKMDIISAKQYRDEWTEQWLKNQARAVAVALFFDEQIKIGKVSFS*