Scaffold Ga0079301_1004716

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1004716
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5621
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F005531	Metagenome / Metatranscriptome	397	Y
F021111	Metagenome / Metatranscriptome	220	Y
F024319	Metagenome / Metatranscriptome	206	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100471616	F024319	AGG	MTNRIWESRNDYQNDAQRLGYVTCSAGCGRVTAWSLCVMCGGNYAEHNLLGKAVI*
Ga0079301_100471618	F005531	AGAAG	MTITYTLWQGSQLLAVNQKASKPEEILAVIAELNKLGKGFTYNIR
Ga0079301_10047163	F021111	GGA	METSKEPSIQINTDGGQIKETDQMGREKFWEDLGRPSDRG*
Ga0079301_10047164	F002489	AGGA	VIEDEKPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHDQGYLLGPAPSFSPGEQEDDAQSS*