NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1004407

Scaffold Ga0079301_1004407


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1004407 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5846
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022872Metagenome212Y
F027829Metagenome193N
F035741Metagenome / Metatranscriptome171N
F067260Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0079301_10044071F022872N/AMSWQIPTQIEQDIIAGKAQYRTFQTGVGGQSILSVPNNAYAVIFGYDFSPAGGGIKAAYAIVDPVEITPSTIRYFETQQISFYTGTDFYPFIHHVNTDFAVYRDAVNNIGVWSIKNDPISRQVYITSDKDITISVGMILDSDVATLNAIPQTNRTPALLTYGGSAQTLATQTDFGPAATPIQFMQPSPKDYQDFGFGLLPNGASGQSFATPDTARGLYDVSAYLNTSFGPLYRDAAACNYFLCLHYALYTQSVPESRG*
Ga0079301_100440715F027829N/AMAFTNRFEADISPKKTRIDAKAYQQYIDIPIGSNPETGKQYTFRAYIAVAKAQKKLNYAPTILVTLTFFKYKLHLQTRDIDALNSAFRKLSSFIDLAEPKLKDSLSKELKTYEEWEKEYIERKNNGIISINR*
Ga0079301_10044073F067260GGAMNHFDRVVNPDLMRCETPEQMLQVLMHHYELDCKIGTITHLAFRQGLKAAVNMVNPKAKTTASAL*
Ga0079301_10044076F035741N/AMKASDVIGKYLIAEVDVPIYAFPGGSQIGVVKKGLVAGPVFSWIEKNGKLYWAFDYTIPGQAPGSYYAEHRPSYWKLSTTAAGGAGLPTNIETPSLLPKWALPVGIGALALFLFK*
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