Scaffold Ga0079301_1003864

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1003864
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6301
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified bacterial viruses → Synechococcus phage S-EIVl (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027508	Metagenome / Metatranscriptome	194	Y
F067679	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_10038643	F027508	N/A	MTASSGQDSASDFDINRFQQLLDRLEASKGRQQRQKSVEGRRDIFGQGLASMMSNF*
Ga0079301_10038648	F067679	N/A	MAVPGRPEQAQTFLRRAADAYNSAMHSVGDLMPTKIKKGFQSGVELMAPESRREITDEQGNRILSSISNYSTLSPNFKKELKNVKGISFTETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKGLVGLAISAPTVASLGQIDITNPLEQFRSKGFAQTYAEEGAEDRRETSQPGTELLERLFLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGITGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTRPPVVTTKERRVISYPGGSSRVVEQDVNTRVPMATRKTASIALAGSLAGALVGNLTNQAIASLNNHPENLPSTNEYR*