 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006639 Open in IMG/M |
| Scaffold ID | Ga0079301_1002813 Open in IMG/M |
| Source Dataset Name | Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7532 |
| Total Scaffold Genes | 13 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (76.92%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Ohio | |||||||
| Coordinates | Lat. (o) | 40.178 | Long. (o) | -81.073 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001326 | Metagenome / Metatranscriptome | 721 | Y |
| F003964 | Metagenome | 459 | Y |
| F006139 | Metagenome / Metatranscriptome | 380 | Y |
| F009743 | Metagenome / Metatranscriptome | 313 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0079301_10028131 | F001326 | GAG | MATYTVTNKYLIDNFAVLQLLTPSEIAVGNSITVAGVDATFNGTYTVRALPQYLFIGIDTQGDLLYDYQFPIADQVLYAKTANGVDRVAASGTVSYAPVCTWVTASDVMIYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIEATYATFDGMGSAPQQSLTPIVKQLLGIPRPAVA* |
| Ga0079301_100281311 | F006139 | N/A | MAVEIVVSLVGGGFAVVVALISKIGYDNKKDHGIVHKALGRIEEKIDNHVENHR* |
| Ga0079301_10028134 | F009743 | AGGAG | MKIKLELKRTPDSAPEYYYTNLFVVTEWERLERRNIQQLSTQPLYSDYCCWMHTILKLKGEQVGDNWREWISKNPELEIIPVLDETDPNPTDAAPTAAN* |
| Ga0079301_10028135 | F003964 | GGAG | VAVVSARVEVVGLKDALKTLNKIDKSLRREITKDYKRIVQPVIDDANKLVPTGVPLSGMARNWQTKSGFQILPWIPGMKQKIAAKINTRAIKEYGGNTTNVGTFAIQWKGATGTMFDTSMAGSLGRALTARYGSRSRVMWKAYEQRQSDVMSEMEQLVKRVMEEANRETA* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |