Scaffold Ga0079301_1001649

Overview

Basic Information

• Taxon OID: 3300006639
• Scaffold ID: Ga0079301_1001649
• Source Dataset Name: Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10183
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (85.29%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Ohio
• Coordinates
  • Lat. (^o): 40.178
  • Long. (^o): -81.073

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000684	Metagenome / Metatranscriptome	938	Y
F000808	Metagenome / Metatranscriptome	882	Y
F001507	Metagenome / Metatranscriptome	681	Y
F014250	Metagenome / Metatranscriptome	264	Y
F034573	Metagenome	174	Y
F040623	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100164911	F040623	AGAAGG	MKVRISLEQTVDIDEAISNDVEFELFASPDMSDEDKVVYLINRFAEDIDSLVKYNEVMDNIQVEYLE*
Ga0079301_100164915	F001507	N/A	MTTTHKPYTISELVNEIYEDNYSHFEFEENMGGDPCDCHLHITMNTIVKYWEN*
Ga0079301_100164920	F000684	AGGA	MTLGGYTYQIGDLFTTSKTGITGRISNFTPINSKLTRVSLQLANGAHRFAMVKTSK*
Ga0079301_100164930	F000808	AGGA	MEYNYSLTVSYDGELHFTLRTADLMEAVDAWTKCVDFGNAKEYATYNLSDPTGKMYTKTFYRNGEVTVK*
Ga0079301_10016494	F034573	AGGAG	MYRINKSVQTSKEEKTAIAMGKLLSDFHLDLEKVGYYLAKSTPYLIFRRSLEVLESAQFQEDVIEHDRIGYNHDRLF*
Ga0079301_10016498	F014250	GAGG	MNNLALAPRLQNLVDLGESGTDILHGELKNLMLEAETELLYWQKVEEDTDYQDAMDSMERKYAEGLLDAYANVYELTYQLAFAIADRNKANG*