NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0079301_1000085

Scaffold Ga0079301_1000085


Overview

Basic Information
Taxon OID3300006639 Open in IMG/M
Scaffold IDGa0079301_1000085 Open in IMG/M
Source Dataset NameDeep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)46261
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (81.82%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Ohio
CoordinatesLat. (o)40.178Long. (o)-81.073Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001464Metagenome / Metatranscriptome689Y
F002622Metagenome / Metatranscriptome542Y
F005000Metagenome / Metatranscriptome415Y
F005053Metagenome / Metatranscriptome413Y
F005054Metagenome / Metatranscriptome413Y
F008245Metagenome / Metatranscriptome336N
F071173Metagenome122N

Sequences

Protein IDFamilyRBSSequence
Ga0079301_100008519F008245GAGGMAEDKNTLELISQITEFNDLHEFMKDEHLDKALAIVVKLLLNPDVPSAKSPMLIMELQAMSTKFAVMASYYSTIAKDKAGTTNNNKKNVYYSLKESIDKLVDALKYVVRYN*
Ga0079301_100008527F005000N/AMRILLQMTHRRIKRFQIDVEFHDNAQLISLRPQYENLLIQDMRGKGYVRVLDIDPAFSVDFTGETWKFLMSIHGVYVGKKKAWQSEGITQGKSIPRTTRQTISKPS*
Ga0079301_100008531F001464GAGMAGENRQRLRKKFVYFFLNGKVHKVLRLSRAKDEVVAWSYLDKKRMLYSYSQVDKHMEKAYTVAEASKILGRHKVTIEEYILQGKVKQPQRVYPISNPESTWSKYMLNEANILDIHEFILDAGHIRDLPSRSELQALLKHNLIMYTKTEDGKFVPVWKAE*
Ga0079301_100008541F071173GGAGMITKFGKRFLTSYLSGNNDFASRELALGIGSSTPNVKGNDTKLDFEFYRLPVELSGFNILQSGVDVDGDPVYSYFVTYKSTIPQDVSGVVSEVGLYPGDRQSFNNFDSKFITSFTNEFNWFNGSDNPTSQGNTQDASGNYTFLSKVSDSMIKVDVSSGQTKEYINSLISDDISGYSINDTISIAYKKADNNLSKIRVKFYSSDLAYYYVDFTPLSGTGDRIQTLTLNNLFSNYTAAPNLPDPSSIIKIGVATTASGGNTTVYFDAIRINDEDTFDPGYGLISRSVLSTPLIKKAGRPVDIEYKLQLDF*
Ga0079301_100008544F005053GGAGGMPMILPRGSVLSIEAKDLLATPEGTTKIWNKITEHNRSDIGISIERIEKAVRTSNGTLRKNHVADKRRFSLSWTMLPSYRTLTVDGAWGAEDLRSFYLSDDGKKEFNIRLNLAKGGADTSSSGALYTPNMAKTSSELYTVVFGGCNFSVVKRGLQPHWNISIELEEV*
Ga0079301_100008549F000258GGAGGVTANYKLDAMLELRKYLWEELSSRDIFDADDYWSDNLNENIVPIIPVQQAPELNQFMSGKKHIVYDKIGMSYDDNWLICCEQILFTVYSTAVAEINEIRNYMTDEFRRMDESARDINRWAGLSDKFKFHSVHIADISPTAPSEELQGFFSSEIILEIKYSRDTDTNGASSTLGRFL*
Ga0079301_10000855F002622AGGAGVSEEEDQYDADRLAYYMEIGAVTLEGMDENGELIYAISEDAETLAPELWQSHTEYVNRSLMELYEDGLVEIEYDENLEATIHLSPEGRKIAREKGLIDMDIDWDIPND*
Ga0079301_100008552F005054N/AMAEILINSQSPIVHQIFWNGDIAVADALPIVKIYDVTLDARVSPAVLPTTVLATITSTLDENNPGTYVVNVPYALTNRNKTLKVNWEYSVGGVAVVRSDEVQVVTPYIDFNYIQDLGYSTDSSDPSYKSYKELIRAERYARKQIEEYTGQKFYLYDETLTVYGYEYDTLPLPAKIYQLHTLSVNDILLRDNINNIDNWNFPVQISESGYSIRINRAGMVDNTVYTANGMVPPSIHDYSGVFHSGVPYKVFARFGWEKVPENVELATAELMKDYFSKDTIWRNKYVKSISTFDWDFEYTGDAYTGTGNALADNLLADYVLTIKAEII*

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