Scaffold Ga0079301

Basic Information
Taxon OID	3300006639 Open in IMG/M
Scaffold ID	Ga0079301_1000038 Open in IMG/M
Source Dataset Name	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006639 Open in IMG/M

Scaffold ID

Ga0079301_1000038 Open in IMG/M

Source Dataset Name

Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Utica-2 Time Series FC 2014_7_11

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	61727
Total Scaffold Genes	98 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	90 (91.84%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

61727

Total Scaffold Genes

98 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

90 (91.84%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (77.78%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Deep Subsurface Shale Carbon Reservoir Microbial Communities From Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location Name	USA: Ohio
Coordinates	Lat. (^o)	40.178	Long. (^o)	-81.073	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Ohio

Coordinates

Lat. (^o)

40.178

Long. (^o)

-81.073

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F002386	Metagenome / Metatranscriptome	565	Y
F002766	Metagenome / Metatranscriptome	531	Y
F007521	Metagenome / Metatranscriptome	349	Y
F015204	Metagenome / Metatranscriptome	256	Y
F017819	Metagenome / Metatranscriptome	238	Y
F027494	Metagenome	194	Y
F033010	Metagenome / Metatranscriptome	178	Y
F038210	Metagenome / Metatranscriptome	166	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0079301_100003815	F007521	AGGAG	MAGRGMGCATRGGGAVESGPKNKVMSEPSKTTGPVMMKKGGMANKGGINQHKRMAMGKPVGKMGGGMMAKGYKKGGAAC*
Ga0079301_10000384	F002766	GGA	MLEFAEAVLKEIRKLQDQSKQIVLNGTITDMERYRFMMGRLEGLRMVEDSVKELLKKVTDDVDDFLK*
Ga0079301_100003851	F027494	AGAAGG	MKYQTEMTFPVELTFEMLPPLVVEGVELPVQMDITKALLTIVGPSGKPRQVDILKTFSEDQIMLWEDQIIDSYFEDTDEE*
Ga0079301_100003854	F017819	N/A	MRKRSKYRPKPVLQSPMDYILSGFKPVRELPGIYLDAQLKNRAALEQVRVGHAVKEDIDMLIGAFNITEALAMSGMGSDWMDEIRQGQDALLELSRRGVARGMRFIMTAKEWEKLKLVMDLHEEQLAQATVYDIEKAHDFVYREIAQGKASAIVQTKKEEA*
Ga0079301_100003867	F015204	AGGTGG	MTFPEWWSQLTKPEQRAIGENNALFVWQECQKYTLMTIEEACKAQVAYDQGFKDGRERFEVKVAGWTLTPGVQPGMIWISDAGGEGGDFHIYELAEVIGKFYKEKF*
Ga0079301_100003869	F001629	AGGAG	MKLNQGELAQGLVDELLEVIHRYDEAFYMSTVIGVLELVKQQLINDSLENQDDL*
Ga0079301_100003874	F038210	N/A	MKLEKNIPLPGGVDPRERYPFPDMAVGDSFLVLDATWIKNLRSAAYMYSRRHPGTRFTCRRHGEGWRLWRVA*
Ga0079301_100003876	F033010	GGA	VNLGIPDCLLAFPHGVFVMVELKVVKRGRKVALSPHQVAFHIKHADLRCPTYILVQYYPPGAMQASKSELLLYCGEQALDVARLGIDTPALARWPWTGVSWAEMRKHLVDS*
Ga0079301_100003894	F002386	GAGG	MRFAFIPKAQYKIGQIIQVHGKTVRVESYTHTGRNVIVHTVDAPKFERIVCICIEPNRFIQGVTL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0079301_1000038

Overview

Ecosystem & Geography

Associated Families

Sequences