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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006638 Open in IMG/M |
| Scaffold ID | Ga0075522_10037059 Open in IMG/M |
| Source Dataset Name | Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2911 |
| Total Scaffold Genes | 6 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Barrow Environmental Observatory site, Alaska | |||||||
| Coordinates | Lat. (o) | 71.299 | Long. (o) | -156.61 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001528 | Metagenome / Metatranscriptome | 677 | Y |
| F005822 | Metagenome / Metatranscriptome | 389 | Y |
| F064903 | Metagenome / Metatranscriptome | 128 | N |
| F090320 | Metagenome / Metatranscriptome | 108 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075522_100370592 | F090320 | AGGAG | MINPKPNKNRESIGLYALSRFGGLDRIDWLMILVSVLIGTIAKQHHFLRLPDGFLEWVFPLLLMMAGYRARGKITEIIEDRRAKDRKASAE* |
| Ga0075522_100370593 | F064903 | GAGG | MRSLFPSNYDRADVLMSAGCSTFVSAALILVIPRVGVLLLEILLGLFFIGCALMARARVRRRMLGKEGPKKSSDAKAKWFDRYDVLMILAVIALQAAAGGLLRKAGWSEGTVSILPLIMFATGILLKPRVVEFVERRRKTRPADAGRRSTAAQPENLDPTDRALGPE* |
| Ga0075522_100370594 | F005822 | GAG | MLVNGTETIAESKGSQPPPANGRAVRAASDSKATPARGMTTRRRRDRQDGDKSAEERFFLAGGSRNGDVPALGRECTSEAEAIINAFREQVSFYRVSEFQARADVGPSGEPILRKDGLKKNNPAS* |
| Ga0075522_100370595 | F001528 | AGGAG | MSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQNQPTVFECIRKVFSFRRGRFSMREYRGGARTVRVS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |