Scaffold Ga0075522_10025494

Overview

Basic Information

• Taxon OID: 3300006638
• Scaffold ID: Ga0075522_10025494
• Source Dataset Name: Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3653
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Source Dataset Sampling Location

• Location Name: USA: Barrow Environmental Observatory site, Alaska
• Coordinates
  • Lat. (^o): 71.299
  • Long. (^o): -156.61

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005786	Metagenome / Metatranscriptome	390	Y
F020040	Metagenome	226	Y
F056860	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075522_100254943	F056860	GGA	MPTDIQTLIGEVAARNHCRIEDGDPIFAVSTINRLMLDEVVEGLIVRVRAAITAFEISARAVETHAGKLLAEEIRGSTSAWKAEIARDINIANVRSCELIDKIHLAHTRPAMLRWGALGAFAAMLFLGCGILIGFYFR*
Ga0075522_100254945	F020040	GAG	MAQLRAVWPQVQQALDAGHTLRLIHKRLNMVGVEISYKRLIVYRGRIERGKKGPAAPASPNMLLPAISQDSTPPAFDPLANLRTQEQKRVDWKYPSGPPDESKLI*
Ga0075522_100254946	F005786	AGGAG	MKKKTTKMRGMRLSEATYKAVVQAAKARDFATPSAFMRAAVEKELRGTDSTLSESEQRIGASLEKYSKQVRRVSTGQQALFAYVDALAKVILSTLPDTDEDTRKAAVARGKLRYSRFLKSVGANMVGDAQAALSELVNRAPEE*