Scaffold Ga0075461_10120928

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10120928
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 814
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045073	Metagenome / Metatranscriptome	153	N
F051094	Metagenome	144	Y
F105069	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_101209281	F045073	N/A	EQQTSEKIQRARTMKLPVSFTEFSKDPSKAVTYLMLFAVVFLYLRMENQDKQLNTGCEDRLTRCESKLDQMAKMLKTQDSLSASLRSELNTYKKIGVIK*
Ga0075461_101209282	F051094	AGGAG	MKYFLLASLLAVTATPRLKNSDPYKKYDLVIDHAQQTIEVTRASIDEAKAMTETKVQQVQESVLKAEQMAKKVELLERVCEVYEVPVPASLEDFEQLRIDDSIRFANMQQINKR*
Ga0075461_101209283	F105069	N/A	MKLLEMFKGQAGEISSKRVVGIVGAVVLFGTMIANSFSPLDIAPSAELVSAVEWVTIL