Scaffold Ga0075461_10013402

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10013402
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2707
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024111	Metagenome / Metatranscriptome	207	Y
F027834	Metagenome / Metatranscriptome	193	Y
F027835	Metagenome / Metatranscriptome	193	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_100134022	F027835	N/A	MKTQRQIDALYERMKTAGGFECALIMAYMKADGGNAQLLEDAFRGTRFDLLPKPRFDHGIETLRAAVRWADMRDESYNFDKTAEELLQEYEIWADCTDEQPIDQHFLTRLQ*
Ga0075461_100134023	F027834	N/A	MKNFSFDEAMCFAYGSTMLTGGSSIGIMDNREYYVPKYGYVVGGIVPEKSCKMDNESAFKHTYNRFFYQAELALERESAVVIGTWVEDGQIVFDLCNILDDMKDALELAAKRGERAIYDLEEQREIFVNYK*
Ga0075461_100134026	F024111	N/A	MMSNPIFAFVFPFGEHGGEFRCKRNFADAESAANWAVDIILKEGDDYCYFKEVESADYVFEPACESHTVVCWHDDAPTWEMYDVID*