Scaffold Ga0075461_10012842

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10012842
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2765
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019474	Metagenome	229	Y
F035746	Metagenome	171	N
F045721	Metagenome	152	N
F046366	Metagenome / Metatranscriptome	151	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_100128422	F035746	GAGG	MAKQHEHDFAKLRHVATKYYRETNCCTVVAVAAAARVGFGKAYHAMKREGRRDKRGAYFTQYKRALAGLGYDVVPVDINMGKTLATAKKRCPKKGTFLVNTRGHVTCIRDGEMVDWAADNNSRKRILFITQVIKRED*
Ga0075461_100128423	F046366	GAGG	MNSATQTVIMHISNDQDYYNDVQEIFERCGDSYDTCIELKEMVDNIMFPAADIQAQNMDLFFRQDIIMDALSQVNWREVYEALVEAV*
Ga0075461_100128424	F019474	GGAGG	MTIEFEVETYRIPAFALPAIVNADYTGILDDEEAFVDNLCEWLDGEYGAGNWHIGDVGEQYFGRSDFGGLSGEVCDVEVVYKIVEME*
Ga0075461_100128429	F045721	GGAG	MAVEVNISKDKADYYIEAYTKDYHLDENKVVRETGTTRLCYIAGYRDYDLEETEQITVLLRLRDDIKDFYSGYPDGEVTVKLVIK