Scaffold Ga0075461_10004394

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10004394
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4653
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (21.05%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F022640	Metagenome / Metatranscriptome	213	Y
F033413	Metagenome / Metatranscriptome	177	Y
F087139	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_1000439411	F005089	N/A	MNINDLYDSIKLSENLAEENYQQRNSVVDCRLDGVCNHYFPLYVEGNPSYKNGEIVLTCKLSKTVKGQFRYTYQINGKRIAKKLIASEFLSLGAFA*
Ga0075461_1000439413	F033413	N/A	MTVHYANLFAQNTDLTAEFVTDFSRTFKSSTFDTYTRNDGKVYIKHGLDRNYKNDVFSVEAMIYEYKGCWVGSQKNFGSFDNFADAIACARNVQLSEDSITQNEAFALMSN*
Ga0075461_1000439419	F087139	N/A	MLLSKASFNNQQVLPFIVKKEDEYTEEGSYSLHLFSRTVITKEGKKYRYLPLKFEGELARFRKRKEAEDYARYRLALD*
Ga0075461_100043944	F022640	AGGA	MRIAFLIATLALGLRVGLIAHASTNEYQEQQAELFCQANPNYCNAK*