Scaffold Ga0075461_10001353

Overview

Basic Information

• Taxon OID: 3300006637
• Scaffold ID: Ga0075461_10001353
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7671
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (46.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.283
  • Long. (^o): -75.3633

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027502	Metagenome	194	Y
F048284	Metagenome	148	Y
F070060	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_100013531	F070060	N/A	LTVKCMTYVQVDDDDFEVIGIDAYGILVKAAWGAQSFVSSWHLVDERKIQLTRRTKPLGWDAKKRTIAQAVEEQGQAV*
Ga0075461_1000135310	F027502	GAG	MTLNARQQQLRERDVRKLSPELNAAAFMQMYMESNFPQTASLPSPQQMQRGLDSNYQVDDLKSIKKPLSGTKYDNPGGF*
Ga0075461_100013539	F048284	GGTGG	VFSKADYELAARILGLPVPQTPAEIAAATPATAQIVRRFGQGLPPMPGQEGDGMYTGATRSLNVYPDNTMPMEKAKLASRLRTEPERPHEDAYLMELLAQLDPQEFDLIMALLEQLAEQEDAESDRLSSQRPLEYDTPNMGSNYSVLNAPSSNGIEPSRAYQPLS*