Scaffold Ga0075461

Basic Information
Taxon OID	3300006637 Open in IMG/M
Scaffold ID	Ga0075461_10000639 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	10078
Total Scaffold Genes	26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (38.46%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

10078

Total Scaffold Genes

26 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (38.46%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.283	Long. (^o)	-75.3633	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Delaware Bay

Coordinates

Lat. (^o)

39.283

Long. (^o)

-75.3633

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003805	Metagenome / Metatranscriptome	467	Y
F005704	Metagenome / Metatranscriptome	392	Y
F006109	Metagenome	381	Y
F014614	Metagenome / Metatranscriptome	261	Y
F017824	Metagenome	238	N
F047029	Metagenome	150	N
F051901	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0075461_1000063912	F047029	GGA	MSEAVGSTPNNPIKLTQYRVTLYPKHGATENIYMEAPDVYTAQQYTRRVYPDHRILAIKPLIDLVEERVS*
Ga0075461_1000063915	F006109	N/A	MTRYVVMAGDRWVTAIYGPGKGIGVTSNREDASSWPNYERAVVAARAAADCTNSLVAVHSIEEPSYRKS*
Ga0075461_1000063916	F017824	N/A	MNNAVMQWKEDFEKSQRLGEGRSRTSSEKSELFELMIWIGGQGAMRDLIRAESLQQAIQFAQNRYPNCRVDVPPKAAKKPKLARSHTSPSLVDRRRKKAAEGK*
Ga0075461_1000063917	F051901	AGG	MTPPPKLNFTKAAAEMARADYLDELFFKDGRDQVSHPLHGTYTGLYQKYTLQKLG*
Ga0075461_1000063918	F003805	N/A	MRPIEHSTESCFHKAATDQWLVDRFNAGDYRGLLEAALILNTLHQLEKTKASWAIQEAADNLADHYGLDRDSA*
Ga0075461_100006392	F014614	N/A	MTDWYADYYRQSRGYNWNDLRELRQQKRRTDLAVPDCFKHEFADRAAYDAWVEEKRQDYFG*
Ga0075461_1000063924	F005704	AGG	MNNRLSLLGGALALLTTVVATTVTIDSRYAKSAEVKEQFCQARKQQLRDRIFELDLKADKTPNDKALREYLQQQLNDGC*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0075461_10000639

Overview

Ecosystem & Geography

Associated Families

Sequences