 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006637 Open in IMG/M |
| Scaffold ID | Ga0075461_10000393 Open in IMG/M |
| Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12165 |
| Total Scaffold Genes | 22 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (86.36%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Delaware Bay | |||||||
| Coordinates | Lat. (o) | 39.283 | Long. (o) | -75.3633 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000888 | Metagenome / Metatranscriptome | 847 | Y |
| F003768 | Metagenome | 469 | Y |
| F039116 | Metagenome / Metatranscriptome | 164 | Y |
| F062727 | Metagenome / Metatranscriptome | 130 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0075461_1000039310 | F003768 | AGG | MAHFAKVENGVVQQVIVVSNDDAPTEIAGQTFLASLGLTGEWVQTSYNNNPIEGASRGKYAGIGDTWNGTEFVAPVIPDIESEV* |
| Ga0075461_100003933 | F062727 | AGG | MHRKPYEVDGGWALILSAVVTTVGGVLVALIAQFRKENKQDHAVVAGMLSHIYRSVGRVETKVDKVENKLNDHIKEHTRS* |
| Ga0075461_100003936 | F039116 | GGAG | MGGNWHGFDHLIGPHSKTSYTSYRRRYFNTLSYIPNTKGPRMNSTIAKALDLGQRLVSLFIASALPIITGGAILGVDVIKSAGVAGLTALFGVVQKLAAASVDGELTSEEISAAFGTPKKKAGK* |
| Ga0075461_100003938 | F000888 | AGGAG | MSAQYFAQLDDNNVVTDVAVVQREFLEANPERYTGRWVETFFDTAGKTYAGIGFTYDEATEDFVAPVVEEPAES* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |