NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0101567_10217409

Scaffold Ga0101567_10217409


Overview

Basic Information
Taxon OID3300006624 Open in IMG/M
Scaffold IDGa0101567_10217409 Open in IMG/M
Source Dataset NameSoil microbial communities from the Leymus chinensis steppe, China - after adding 1.75 g N m- 2, yr-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChengdu Institute of Biology, Chinese Academy of Sciences
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The Leymus Chinensis Steppe, China - Nitrogen Deposition

Source Dataset Sampling Location
Location Namethe Inner Mongolia Grassland Ecosystem Research Station (IMGERS), China
CoordinatesLat. (o)43.63Long. (o)116.7Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042552Metagenome158N

Sequences

Protein IDFamilyRBSSequence
Ga0101567_102174091F042552AGGAGGMHEQREHLLEELRKAQQALTLLKELEPLLTESKGRELEGHVRALKQLAQSLPEGHIVRLVLESALEPSNVGTVSRARSAIEGEISTLQG

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