Scaffold Ga0101442_133190

Overview

Basic Information

• Taxon OID: 3300006622
• Scaffold ID: Ga0101442_133190
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4244
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012019	Metagenome / Metatranscriptome	284	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101442_1331906	F012019	N/A	MPQKDKQLMAKHEVELYIKGTYLSMIECDDGSLYEEDCPEFSSTKLPGTENFDTEALTTFVQNNIKAIWDGELDNPEHFSSYEIKKIDGPSGAFYEDGMNLRSIAVIIEIETEEDVDELDFDDFFHAIVFELVSENMTFTFTRFDNYSSEIIE*