Scaffold Ga0101442_111765

Overview

Basic Information

• Taxon OID: 3300006622
• Scaffold ID: Ga0101442_111765
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7611
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002221	Metagenome	581	Y
F013088	Metagenome / Metatranscriptome	274	Y
F038657	Metagenome / Metatranscriptome	165	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101442_11176511	F013088	GGAG	MDEKNKKALWIPEELHKDIKIFAIENNLTIEQASQMLIKLGMVTYEAEKGYDSV*
Ga0101442_1117655	F002221	GAG	MKTYLDETLETKLKELRDYESETYIRWGSRKRIFSMVGVKFEIKFCKAEMLLRDTMHNGHVKKKLQMVEMMHRALDALNKKCEESGYTRIQPNTRCFNFDNKTAIVCDTDDEKPILNKIHKDEPDMMIFSVEELLRCIPSDFMKAKELLSKLDKTVNFARISYD*
Ga0101442_1117658	F038657	GGAG	MSILGGMGNTENKQQIYLGFKTMGQKFYANGETEVDVKYLQLDPETFKSGWGRYTKADGFQYQWDSKFTVPEKRPSEEWKRAFSCWVMPHGAEHAYLWQRFSFAETSAFDKILDLFWHDVANNQGKLPVVEFTGSKIIQVGMGSSSELSFKFSKWADRFDGNVVPDWYIDPDAPADDDFVSPNEGLADKVNDMIVKTSELSDDDIPF*