Scaffold Ga0101442_107511

Overview

Basic Information

• Taxon OID: 3300006622
• Scaffold ID: Ga0101442_107511
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ08 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2285
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031863	Metagenome / Metatranscriptome	181	Y
F056582	Metagenome / Metatranscriptome	137	Y
F057337	Metagenome / Metatranscriptome	136	N
F071664	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101442_1075114	F056582	GGA	MARYKTYKIENTPSEKFPQMVTISKKLKGNLFEKKFISEQKAKAWIEFGAAHKLINNGAKKVKNELGSIGILTETAAW*
Ga0101442_1075115	F057337	N/A	MTYSELSTMTIEDLRTLNSMVVETIKSKKSLLALEKKDSLYVGAIVSVDHPKMAGHELKVTKINRTKAVCELINGLGSYNVPLNMINIING*
Ga0101442_1075116	F031863	N/A	MLDRKLLPVGNDLYVIKRKFKIEHWDKIVQHFGAKEVCEAYHCETILRGRDGYFYLCDKVDDAKIIE*
Ga0101442_1075117	F071664	N/A	MIKKIKSKLLTYLFTDWVKSETDLETIKLTSQMLKNREIQITGIKPVLGFRAHHKNQIQ*