Scaffold Ga0101444_112283

Overview

Basic Information

• Taxon OID: 3300006620
• Scaffold ID: Ga0101444_112283
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ10 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6264
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019396	Metagenome	230	Y
F026261	Metagenome / Metatranscriptome	198	Y
F048972	Metagenome	147	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0101444_1122835	F019396	GGAGG	LNSNWQPYLKLDQEGWPCMAQQTYEPLISEDGTTFCKNYNVDSEYQKMENKPRPFYTKEVVDWFFQNELTYLELFKDKKYAPEVKDIDYKNQKIYIKWYGKSCNQIINDPEIKEWPEYMWRRQIRDIIVDQYDEGVYKLTMYPHCHYITDTKQMKAIDWYGCVPIDDPFIEQKYMQGIIHDTAQFRLDETGEPIDDKVNLEIMFKRSLGEHVLWGDENMSYIYRELFGDG*
Ga0101444_1122836	F026261	GGA	MAKLVGTTKDIIDWDPIVDLCANCTTGDYNSVKTVVDRSEGNWRDNPELLGSYHDVINTWDEAGYNLDEIQWWDYYPGEHFDIEIQNKFAKIINAEPLRVFVSDVAPCNNVPYHWDVEDKEKEWLKLGELKRWVCFMDKPRWGNVLVLEEQAFHNVAQGEIWEWDSYRSHHAGTCMGVHHQYLFHFLGRPNK*
Ga0101444_1122838	F048972	AGG	MQIKNLGVCNTIDWDGVIEQCASVEPEFVGPSHKRGDTIPGLDPILDMWEEAGIKTVHEGGTAGWDMFIPGKQFEQSIVDAWNEFYGLDCKNVWISRIHPGRFAPIHWDVHDNEENIPDCHRYHCHIGSPQWGHIFIAGDETFYNIPQGTTYEWEDRKIWHAGTNCGLVPKYIWNAW*