Scaffold Ga0101444_103693

Overview

Basic Information

• Taxon OID: 3300006620
• Scaffold ID: Ga0101444_103693
• Source Dataset Name: Marine coastal surface water microbial communities in Port Hacking, Sydney, Australia ? TJ10 time point
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Australian Centre for Ecogenomics
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4342
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water → Exploring Phylogenetic Diversity In Port Hacking Ocean In Sydney, Australia

Source Dataset Sampling Location

• Location Name: Port Hacking, Australia
• Coordinates
  • Lat. (^o): -34.1192
  • Long. (^o): 151.2267

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003834	Metagenome / Metatranscriptome	466	N
F009561	Metagenome / Metatranscriptome	316	N
F027901	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0101444_10369311	F003834	AGGA	MSSSKTPIRQDEKDYLDHFIETKYDDRKNVLKTEMQDTIDKEAEDNFEAFKDKLKISKMHNEVRTLYEDHKKFANEMDSILLEKKGKLDNAINVLEDKLDQWKKIRKWKNDIERSLIKEPDELDRLLKKLCHEETERDYYGGPRGKAIQMLDMSKEYCKNLLNAGQSLTTVWGVLNTEMGKEKINTNTIPKPEFLAITK*
Ga0101444_1036933	F009561	AGGAG	MXXXXXXXXXVISNNKGKAREIEKLENQISDAKESVSVLGGAIACGFLHDKHSLILQEWIVEYKQLIEQLETHLTEMRTHG*
Ga0101444_1036938	F027901	GGA	MTDKVDCAIWIWDNDMQRKKRIRLQTLLNRVNHTLRHENITYFALEKDRNKFAKECRT*